국립부경대학교 식품영양학전공

 - 2021~2024 경북대학교 응용생명과학과 농학박사

 - 2019~2021 경북대학교 응용생명과학과 농학석사

 - 2014~2019 경북대학교 응용생명과학부 환경생명화학전공 농학사, 생물정보학사

- 2025.09.~   국립부경대학교 식품과학부 식품영양학전공 조교수

- 2024~2025 경북대학교 차세대시퀀싱핵심연구지원센터, 박사후연구원

- 미생물군집 기반 역학 연구

- 미생물-숙주 상호작용

- 생물정보학적 분석 기술 개발

- 식품미생물학, 식품위생학, 미생물학, 미생물학실험, 식품위생법규

Publications: https://scholar.google.com/citations?user=IUa5sD8AAAAJ&hl=ko

1.     Park, S., Kim, M.J., Shin, J.H., Kim, E., Son, M., & Lee, S. (2025) Chronic PET­Microplastic Exposure: Disruption of Gut–Liver Homeostasis and Risk of Hepatic Steatosis. Advanced Science, e12030

2.     Hathurusinghe, SHK, Bashizi, T., Jeong, M., Kim, M.J., Pande, A., Shin, J.H. (2025) Enhancing cucumber growth and disease resistance against Sclerotinia sclerotiorum by exogenous co-inoculation of Bacillus amyloliquefaciens KACC17029 and Salicylic acid. Plant Growth Regulation 1-16

3.     Park, T.H.^†, Kim, M.J.^†, Lee, Y.K., Lee, J.S., Lee, J., Park, H.Y., Yang, J.D., & Shin, J.H. (2025) Comparative Microbiome Analysis of Biofilm in Contracted Breast Capsules: A Cross-Sectional Study. BMC Microbiology 25(1): 379

4.     Bashizi, T., Kim, M.J., Lim, K., Lee, G.D., Tagele, S.B., & Shin, J.H. (2025) Application of a Synthetic Microbial Community to Enhance Pepper Resistance Against Phytophthora capsica. Plants 14(11): 1625

5.     Hyun, Y., Kim, M.J., & Shin, J.H. (2025) Complete Genome Sequence of Flavobacterium nitrogenifigens Strain KACC 18538 Chromosome, Isolated from the Rhizosphere of Switchgrass (Panicum virgatum). Microbiology and Biotechnology Letters 53(1): 112-114

6.     Bashizi, T., Kim, M.J., Lee, G.D., & Shin, J.H. (2025) Whole Genome Sequence of Flavobacterium anhuiense Strain T4, Isolated from the Rhizosphere of Pepper (Capsicum annuum L.). Microbiology and Biotechnology Letters 53(1): 108-111

7.     Hwang, H.J.^†, Kim, M.J.^†, & Shin, J.H. (2024) Complete Genome Sequence of Priestia aryabhattai KNU10, a Stress-Tolerant Strain with Plant Growth-Promoting Rhizobacteria (PGPR) Activity. Microbiology and Biotechnology Letters 52(4): 487-489

8.     Kim, M.J.^†, Han, S.Y.^†, Kang, D. Shin, J.H., & Lee, S. (2024) Functional Insights into Microbial Communities of Korean Traditional Rice Wine (Makgeolli) during Fermentation. LWT-Food Science and Technology, 116826

9.     Lee, G.D. Ibal, J.C., Park, T.H., Kim, M.J., Choi, S.D., & Shin, J.H. (2024) Whole-genome sequences of Beauveria bassiana KNU-101 using the hybrid assembly approach. Microbiology Resource Announcements, e00681-23

10.  Kim, M.J., Jung, D.R., Lee, J.M., Kim, I., Son, H.W., Kim, E.S., & Shin, J.H. (2024) Microbial Dysbiosis Index for Assessing Colitis Status in Mouse Models: A Systematic Review and Meta-Analysis. iScience, 108657

11.  Kim, M.J., Kang, D., Lee, G.D., Kim, K., Kim, J., Shin, J.H. & Lee, S. (2023) Interplays between Cyanobacterial Blooms and Antibiotic Resistance Genes. Environment International, 108268

12.  Sliti, A., Kim, M.J., Lee, G.D., Park, Y.J., & Shin, J.H. (2023) Whole-Genome Sequence of Priestia aryabhattai Strain S2 Isolated from the Rhizosphere of Soybean (Glycine max). Microbiology and Biotechnology Letters 51(3): 296-299

13.  Lee, G.D., Park, T.H., Kim, M.J., & Shin, J.H. (2023) Complete genome sequence of Bacillus velezensis 2F-NA isolation from the soil of a livestock farmhouse. The Microbiological Society of Korea 59(3), 214-216

14.  Jo, J.Y.^†, Lee, G.D.^†, Ahmad, S., Son, H.W., Kim, M.J., Sliti, A., Lee, S., Kim, K., Lee, S.E., & Shin, J.H. (2023) The Alteration of the Gut Microbiome during Ramadan Offers a Novel Perspective on Ramadan Fasting: A pilot study. Microorganisms 11(8), 2106

15.  Kim, J.^†, Lee, G.D. ^†, Han, S., Kim, M.J., Shin, J.H., & Lee, S. (2023) Microbial Communities in Aerosol Generated from Cyanobacterial Bloom-affected Freshwater Bodies: an Exploratory Study in Nakdong River, South Korea. Frontiers in Microbiology, 1203317

16.  Bashizi, T., Kim, M.J., Lee, G.D., Tagele, S.B., & Shin, J.H. (2023) Whole-Genome Sequence of Pseudomonas frederiksbergensis Strain A6, Isolated from the Rhizosphere of Pepper (Capsicum annuum L.) Microbiology Resource Announcements, e00229-23

17.  Park, C.E., Cho, B.J., Kim, M.J., Kim, M.C., Park, M.K., Son, J.I., Park, H.C., & Shin, J.H. (2023) Ecoinformatic Analysis of the Gut Ecological Diversity of Wild and Captive Long-Tailed Gorals Using Improved ITS2 Region Primers to Support Their Conservation. Microorganisms 11(6), 1368

18.  Jeong, M., Tagele, S.B., Kim, M.J., Ko, S.H., Kim, K.S., Koh, J.G., Jung, D.R., Jo, Y.J., Jung, Y.G., Park, Y.J., Kim, M.S., Lim, K., & Shin, J.H. (2023) The Death of Korean Fir (Abies koreana) Affects Soil Symbiotic Fungal Microbiome: Preliminary Findings. Frontiers in Forests and Global Change, 5, 289

19.  Jung, D.R.^†, Yoo, H.Y.^†, Kim, M.J., Singh, V., Park, S.H., Jeong, M., Park, B.J., & Shin, J.H. (2022) Comparative Analysis of Scalp and Gut Microbiome in Androgenetic Alopecia: A Korean Cross-sectional Study. Frontiers in Microbiology, 4921

20.  Kim, M.J., Park, T.H., Jung, D.R., Lee, G.D., & Shin, J.H. (2022) Complete Genome sequence of Bacillus inaquosorum 1HC-NA assembled from the Oxford Nanopore sequencing data. The Microbiological Society of Korea, 58(3), 194-196

21.  Kim, M.J., Park, T.H., Jeong, M., Lee, G.D., Jung, D.R., & Shin, J.H. (2022) Complete Genome Sequence of Bacillus amyloliquefaciens KNU-28 Isolated from Peach Leaves (Prunus Persica [L.] Batsch). Microbiology Resource Announcements, e00934-22

22.  Lee, G.D., Kim, M.J., & Shin, J.H. (2021) Data on complete genome sequence and annotation of Paenibacillus sonchi LMG 24727^T. Data in brief, 38, 107271

23.  Park, C.E., Cho, B.J., Kim, M.J., Park, H.C., & Shin, J.H. (2021) Geographical Relationships between Long-Tailed Goral (Naemorhedus caudatus) Populations Based on Gut Microbiome Analysis. Microorganisms, 9(9), 2002

24.  Kim, M.J., Tagele, S.B., Jo, H.W., Kim, M.C., Jung, Y.G., Park, Y.J., So, J.H., Kim, H.J., Kim, H.J., Lee, D.G., Kang, S., & Shin, J.H. (2021) Effect of a bioconverted product of Lotus corniculatus seed on the axillary microbiome and body odor. Scientific Reports, 11(1), 1-14

25.  Hwang, T.K., Park, Y.J., Kim, M.J., Lee, G.D., Kim, R.H., Lee, T.I., Park, S.K., & Shin, J.H. (2021) Whole-genome sequence of Bacillus aryabhattai strain GW320, a potential plant growth-promoting rhizobacterium from Cucumis sativus L. rhizospheric soil. The Microbiological Society of Korea, 57(1), 62-65

26.  Hwang, Y.J., Son, J.S., Lee, S.Y., Kim, M.J., Park, J.M., Shin, J.H., & Ghim, S.Y. (2021) Adhaeribacter radiodurans sp. nov., isolated from the rhizospheric soil of Elymus tsukushiensis, a plant native to the Dokdo Islands, Republic of Korea. International Journal of Systematic and Evolutionary Microbiology 71(1), 004612

27.  Lee, H.^†, Jo, E.^†, Kim, J., Moon, K., Kim, M.J., Shin, J.H., & Cha, J. (2021) Complete Genome Sequence and Antimicrobial Activities of Bacillus velezensis MV2 Isolated from a Malva verticillate Leaf. Microbiology and Biotechnology Letters, 49(1), 111-119

28.  Park, M.K., Park, Y.J., Kim, M.J., Kim, M.C., Ibal, J.C., Kang, G.U., Lee, G.D., Tagele, S.B., Kwon, H.J., Kang, M.S., Kim, M.H., Kim, S.Y., & Shin, J.H. (2020) Complete genome sequence of a plant growth-promoting bacterium Pseudarthrobacter sp. NIBRBAC000502772, isolated from shooting range soil in the Republic of Korea. The Microbiological Society of Korea 56(4), 390-393

29.  Kim, M.J., Park, Y.J., Park, M.K., Park, C.E., Jo, Y.J., Tagele, S.B., & Shin, J.H. (2020) Complete genome sequence of Labrys sp. KNU-23 isolated from ginseng soil in the Republic of Korea. The Microbiological Society of Korea 56(4), 410-412

30.  Jo, H.W., Tagele, S.B., Pham, H.Q., Kim, M.C., Choi, S.D., Kim, M.J., Park, Y.J,, Ibal, J.C., Park, G.S., & Shin, J.H. (2020) Response of soil bacterial community and pepper plant growth to application of Bacillus thuringiensis KNU-07. Agronomy 10(4), 551

31.  Park, C.E., Park, Y.J., Kim, M.C., Park, M.K., Jung, Y.G., Choi, S.D., Jo, Y.J., Kang, G.U., Kim, M.J., Li, Q.X., Yoza, B.A., Kim, K.H., Park, H.C., & Shin, J.H. (2020) The first complete mitochondrial genome sequence of the korean endemic catfish Silurus microdorsalis (Actinopteri, Siluriformes, Siluridae). Mitochondrial DNA Part B, 5(1), 131-132

Park, M.K., Park, Y.J., Kim, M.C., Kang G.U., Kim, M.J., Jo, Y.J., Kwon, H.J., Kang, M.S., Kim, M.H., Kim, S.Y., & Shin, J.H. (2019) Complete genome sequence of Pseudarthrobacter sp. NIBRBAC000502771 isolated from shooting range soil in Republic of Korea. The Microbiological Society of Korea, 55(4), 419-421

- 국립부경대학교 대연캠퍼스 자연과학1관(B15) 5310호 김민지교수연구실

- 국립부경대학교 대연캠퍼스 자연과학1관(B15) 5327B호 시스템미생물학실험실

- 연구실 홈페이지: https://sites.google.com/view/smlab-kim/home?authuser=0